RAdelaide 2024

Dr Stevie Pederson
Black Ochre Data Labs
Indigenous Genomics
Telethon Kids Institute

July 9-11, 2024

Course Details

This will be a three day course to enable researchers to develop their capabilities using the language R. Beginners are welcome and intermediate users will also gain a great deal from attending.

Data for the workshop is available as a zip file here

Provisional Course Outline

Day 1	Topic	Notes	Estimated Duration (approx)
9:00	Welcome To Country		15min
	Installation Help		15min
	Introducing R & RStudio	Introduction	40min
	Spreadsheet-Like Data	Data Import	50min
10:30	Morning Tea
11:00	Spreadsheet-Like Data (continued)
	Exploring & Manipulating Data	Data Exploration	60min
12:30	Lunch
1:30	Visualising Your Data with ggplot2	Introductory Visualisation	70min
	Using stringr to Modify Text	Working With Text	30min
3:00	Afternoon Tea
3:30	Reshaping Data With tidyr	Reshaping Data	20min
4:00	Challenges and Bring Your Own Data	Day1

Day 2	Topic	Notes	Estimated Duration (approx)
9:00	Day 1 Challenges	Day1	30min
9:30	Using stringr to Modify Text (continued)	Working With Text	15min
9:45	Reshaping Data With tidyr	Reshaping Data	20min
10:30	Morning Tea
11:00	Vectors and Data Structures in R	Data Types	70min
12:30	Lunch
1:30	Basic Statistical Analysis	Basic Statistics	70min
3:00	Afternoon Tea
3:30	Using Rmarkdown	RMarkdown	60min

Day 3	Topic	Notes	Estimated Duration (approx)
9:00	Questions & Comments	Questions From The Floor	15min
9:15	Functions	Functions	50min
10:00	The Bioconductor Project	The Bioconductor Project	40min
10:30	Morning Tea
11:00	Working with Sequences and Genomic Ranges	References and Ranges	60min
11:00	Introduction to RNA-Seq	RNA-Seq	30min
12:30	Lunch
1:30	Bulk RNA-Seq Analysis	Differential Gene Expression	120min
3:00	Afternoon Tea
3:30	Enrichment Analysis	Finding the Underlying Biology	70min